Cloning your site is just another level in fix wordpress malware that may be very useful. Cloning simply means that you have backed up your site to a totally different place, (offline, as in a folder, so as to not have SEO problems) where you can get it at a moment's notice if the need arises.
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What is? Out of all the possible options you can make, which one should you choose and which one is right for you specifically at the moment?
Along with adding a secret key to your wp-config.php document, also consider changing your user password to something that is strong and unique. A good tip is to avoid phrases, use letters, and include amounts, although wordPress will let you know the strength useful link of your password. It's also a good idea to change your password regularly - say once.
Of course you can install more plugins to make your store like share buttons or automated backup plugin. That's all. Your store is up and running!